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  DNA Damage & Toxicology Facility  
spacer The DNA Damage and Toxicology Core provides expertise, equipment and facilities to perform DNA damage and toxicology studies related to toxic or hypoxic tissue/cell injury in drug development, diseases or aging. In addition to offering standard cytotoxicity assays, the core can measure oxidative damage and quantify levels of apoptosis and necrosis in cells and tissues by using quantitative cytochemistry, immunocytochemistry techniques, and 3-D imaging.

Services Provided: 

  • Toxicity testing in vitro and in vivo
  • Isolation of DNA in damage-free conditions
  • In vitro DNA fragmentation assays
  • DNA fragmentation assays in cells (single-cell DNA fragmentation through ds- or ss-breaks by neutral or alkaline Comet assay) and tissues (in situ DNA fragmentation by TUNEL or ISEL assays) combined, if required, with quantitative immunocytochemistry and intracellular localization of cell death-associated proteins
  • Assessment of direct oxidative DNA breaks and modifications
  • Measurements of oxidative, membrane damage and apoptotic markers using quantitative immunocytochemistry
  • Measurement of apoptotic DNA-degrading enzymes activities

Technology Description

 

The mechanisms of toxic tissue injury and cell death underlie numerous human diseases as well as the effects of pharmaceutical drugs and environmental toxins. These mechanisms are complex and vary with tissue structure, vascularization, spectrum of cell death proteins, nature of damaging agent, the strength, length and frequency of the exposure to the injury, and many other factors. Accordingly, cell death can take forms of apoptosis, necrosis, autophagy, mitotic catastrophe, as well as some intermediate or more specific forms of cell death including aponecrosis, oncosis, anoikis or abortosis. To approach this complexity, the best strategy for assessment of toxic tissue injury includes the use of: a) common methods that occur in all injuries independent of causes, mechanisms or the origin of tissue; b) methods that are quantitative; and c) approaches that allow, if necessary, combining observations with other methods to determine the mechanism of cell injury and death.

DNA fragmentation (i.e., accumulation of unprepared double-stranded DNA breaks) is a form of DNA damage, which indicates that cell death reached the point of no return and became irreversible. DNA fragmentation is a hallmark of all types of cell death regardless of the mechanism. To determine the mechanisms and molecules involved in cell death, DNA fragmentation assays can be easily combined with immunocytochemistry.

 

Contact information:

DNA Damage & Toxicology Core
Biomedical Research Building I, Room B324
4301 West Markham Street
Mail Slot 638
Little Rock, AR 72205
 

Alexei Basnakian, M.D., Ph.D., Director
Department of Pharmacology & Toxicology
UAMS College of Medicine
basnakianalexeig@uams.edu
501-352-2870

 

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The Arkansas INBRE is supported by a grant  from the National Institutes of Health

National Institute of General Medical Sciences (P20 GM103429).

Please contact Diane McKinstry regarding questions or comments about this site or our program.
For more information about the University of Arkansas for Medical Sciences visit http://www.uams.edu.

 
 
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